PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6777_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Nin-like
Protein Properties Length: 873aa    MW: 97200 Da    PI: 5.7987
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6777_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK216.4e-07598623126
         RWP-RK   1 aekeisledlskyFslpikdAAkeLg 26 
                    aek+i+l++l++yF++++kdAAk++g
  Neem_6777_f_4 598 AEKTITLQVLRQYFAGSLKDAAKSIG 623
                    589*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006661.1E-25776859IPR000270PB1 domain
PROSITE profilePS5174525.665776859IPR000270PB1 domain
CDDcd064071.08E-42777857No hitNo description
SuperFamilySSF542771.37E-22777859No hitNo description
PfamPF005642.0E-18777857IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.6E-23777855No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MDLDYMDELL AEGCWLETID GSEFPHSIPS TSTTLFDSSF VWPASETING DKSMSHSQQN  60
NQNDWQKLFF QGTSTMSELQ SQSPISNQSL SHSVINVDGG YSQLENNVTE DSELSGRWWI  120
APRANSGPST SVIQRLIWAL GNIKDFTNNK DVLIQLWVPI SRAGGRVLTT YDQPFSVDLN  180
CQKLANYRDI SVNYYFSAEE DSKDVTGLPG RVFLGKVPEW TPDVQFFRSD EYSRVDHAQQ  240
YDVRGTLAVP VFEQGSRTCL GVIEVVMTTR KIKYGSELES VRKALEAVDL RTSEVPSIEN  300
IKVSDNLYQA ALPEIQEVLR CACETHRLPL AQTWVPCIQQ GKGGFWHSHK TYNNCVSTVD  360
RACHIADPDM WGFHEACSEH HLLKGQGVAG GAFMTNQPCF SSDITSLKKT KYPLSHHARM  420
FGLCGAVAIR LRSILTGKAD FVLEFFLPKG CRDPEEQRKM LGSLSIIIQQ VCQSLRVVAD  480
EELEEETSSP ISEVVSPLDG ILSREKMFKV DTHSEKYSQE NSCWTACVTA VQKDCDVSLN  540
QKGEPRMVPG EKFLKVRHHD KDFSLKGSGE YFGDSNSVEG SFSSVALGRT GEKRRTKAEK  600
TITLQVLRQY FAGSLKDAAK SIGGDSGSLQ IGSFYTNFRE LASPNVSGTS PLSTSMPADH  660
SKPTSMKPKG RNFKPRAAKS PSSSCSQSSS SSQCVSSGQH PSVNNIAGGE DPMVGESSGD  720
VVLKRGRGEA ELHASSEEPK LMPRSQSYKS LREQHTSELL PSLPENYGRI SQDVDGHRVK  780
VTFGEEKIRL RIQDNWKFQD LSQEIARRFS IEDMSLFDLK YLDDDSEWVL LTCDADLEEC  840
IDVCRLSQSQ TIKLSLQISH HLMERRLGCS SNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435364.10.0hypothetical protein CICLE_v10000188mg
RefseqXP_006435365.10.0hypothetical protein CICLE_v10000188mg
RefseqXP_006435366.10.0hypothetical protein CICLE_v10000188mg
TrEMBLA0A067GZS40.0A0A067GZS4_CITSI; Uncharacterized protein
TrEMBLV4TAM90.0V4TAM9_9R
STRINGPOPTR_0005s27310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein